see also my scholar Google Scholar profile


  • Foutel-Rodier F., Blanquart F., Courau P., Czuppon P., Duchamps J.-J., Gamblin J., Kerdoncuff É., Kulathinal R., Régnier L., Vuduc L., Lambert A., Schertzer E. (2022). From individual-based epidemic models to McKendrick-von Foerster PDEs: A guide to modeling and inferring COVID-19 dynamics, Journal of Mathematical Biology (view online)
  • Czuppon P., Billiard S. (2022). Revisiting the number of self-incompatibility alleles in finite populations: from old models to new results, Journal of Evolutionary Biology (view online)
  • Czuppon P., Schertzer E., Blanquart F., Débarre F. (2021). The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection, Journal of the Royal Society Interface (view online)
  • Czuppon P., Débarre F., Gonçalves A., Tenaillon O., Perelson A.S., Guedj J., Blanquart F. (2021). Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action, PLoS Computational Biology (view online)
  • Czuppon P., Blanquart F., Uecker H., Débarre F. (2021). The effect of habitat choice on evolutionary rescue in subdivided populations, The American Naturalist (view online)
  • Czuppon P., Constable G.W.A. (2019). Invasion and extinction dynamics of mating types under facultative sexual reproduction, Genetics 213 (2): 567-580 (preprint) (Genetics link)
  • Czuppon P., Rogers D.W. (2019). Evolution of mating types in finite populations: the precarious advantage of being rare, Journal of Evolutionary Biology 32: 1290-1299 (view online)
  • Czuppon P., Gokhale C.S. (2018). Disentangling eco-evolutionary effects on trait fixation, Theoretical Population Biology 124: 93-107 (preprint) (TPB link)
  • Czuppon P., Traulsen A. (2018). Fixation probabilities in populations under demographic fluctuations, Journal of Mathematical Biology 77(4): 1233-1277 (view online)
  • Czuppon P., Pfaffelhuber P. (2018). Limits of noise for autoregulated gene expression, Journal of Mathematical Biology 77(4): 1153-1191 (view online)
  • Czuppon P., Pfaffelhuber P. (2017). A spatial model for selection and cooperation, Journal of Applied Probability 54 (2): 522-539. (view onlinepdf)
  • Kumberger P., Kuttler C., Czuppon P., Hense B.A. (2016). Multiple regulation mechanisms of bacterial quorum sensing. BIOMATH 5 (1). (view online)
  • Schlüter J.P., Czuppon P., Schauer O., Pfaffelhuber P., McIntosh M., Becker A. (2015). Classification of phenotypic subpopulations in isogenic bacterial cultures by triple promoter probing at single cell level. Journal of Biotechnology 198: 3-14. (view onlinepdf)
  • Czuppon P., Pfaffelhuber P. (2014). Some limit results for Markov chains indexed by trees. Electronic Communications in Probability, 19, 1-11. (view online)
  • McIntosh M., Czuppon P., Best K., Becker A., Pfaffelhuber P. (2013). Modeling quorum sensing in Sinorhizobium meliloti. Int. J. Biomath. Biostat 2: 59-74. (pdf)


  • Czuppon P., Traulsen A. (2021). Understanding evolutionary and ecological dynamics using a continuum limit. Ecology and Evolution (view online)
  • Ruzicka F., Dutoit L., Czuppon P., Jordan C.Y., Li X.-Y., Olito C., Papoli Yazdi H., Runemark A., Svensson E.I., Connallon T. (2020) The search for sexually antagonistic genes: Practical insights from studies of local adaptation and statistical genomics. Evolution Letters 4(5): 398-415. (view online)


  • Rubo M., Czuppon P. (2022) Years of life lost cannot always be taken at face value: Response to “COVID-19 – exploring the implications of long-term condition type and extent of multimorbidity on years of life lost: a modelling study”. Wellcome Open Research 5:137. (view online)


Phenotypic heterogeneity in bacterial populations – a mathematical study (2016)
(view online)